Publications

Ernst, C, Eling, N, Martinez-Jimenez, CP, Marioni, JC, Odom, DT. Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis. Nat Commun. 2019;10 (1):1251. doi: 10.1038/s41467-019-09182-1. PubMed PMID:30890697 .

Wolf, FA, Hamey, FK, Plass, M, Solana, J, Dahlin, JS, Göttgens, B et al.. PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells. Genome Biol. 2019;20 (1):59. doi: 10.1186/s13059-019-1663-x. PubMed PMID:30890159 .

Klaus, J, Kanton, S, Kyrousi, C, Ayo-Martin, AC, Di Giaimo, R, Riesenberg, S et al.. Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia. Nat. Med. 2019; :. doi: 10.1038/s41591-019-0371-0. PubMed PMID:30858616 .

Fröhlich, F, Reiser, A, Fink, L, Woschée, D, Ligon, T, Theis, FJ et al.. Erratum: Publisher Correction: Multi-experiment nonlinear mixed effect modeling of single-cell translation kinetics after transfection. NPJ Syst Biol Appl. 2019;5 :11. doi: 10.1038/s41540-019-0083-6. PubMed PMID:30854226 PubMed Central PMC6405748.

Treutlein, B, Camp, JG. Evaluation of Wu et al.: Strengthening Single-Cell Bioinformatic Comparisons for Improving Organoid Differentiation. Cell Stem Cell. 2019;24 (3):343-344. doi: 10.1016/j.stem.2019.02.010. PubMed PMID:30849359 .

Page, N, Klimek, B, De Roo, M, Steinbach, K, Soldati, H, Lemeille, S et al.. Expression of the DNA-Binding Factor TOX Promotes the Encephalitogenic Potential of Microbe-Induced Autoreactive CD8⁺ T Cells. Immunity. 2019;50 (3):763. doi: 10.1016/j.immuni.2019.02.011. PubMed PMID:30893589 .

Ernst, C, Eling, N, Martinez-Jimenez, CP, Marioni, JC, Odom, DT. Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis. Nat Commun. 2019;10 (1):1251. doi: 10.1038/s41467-019-09182-1. PubMed PMID:30890697 .

Wolf, FA, Hamey, FK, Plass, M, Solana, J, Dahlin, JS, Göttgens, B et al.. PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells. Genome Biol. 2019;20 (1):59. doi: 10.1186/s13059-019-1663-x. PubMed PMID:30890159 .

Salvagno, C, Ciampricotti, M, Tuit, S, Hau, CS, van Weverwijk, A, Coffelt, SB et al.. Therapeutic targeting of macrophages enhances chemotherapy efficacy by unleashing type I interferon response. Nat. Cell Biol. 2019; :. doi: 10.1038/s41556-019-0298-1. PubMed PMID:30886344 .

van Steensel, B, Furlong, EEM. The role of transcription in shaping the spatial organization of the genome. Nat. Rev. Mol. Cell Biol. 2019; :. doi: 10.1038/s41580-019-0114-6. PubMed PMID:30886333 .

Hiratani, I, Takahashi, S. DNA Replication Timing Enters the Single-Cell Era. Genes (Basel). 2019;10 (3):. doi: 10.3390/genes10030221. PubMed PMID:30884743 .

Paolillo, C, Londin, E, Fortina, P. Single-Cell Genomics. Clin. Chem. 2019; :. doi: 10.1373/clinchem.2017.283895. PubMed PMID:30872376 .

Wang, S, Ji, F, Li, Z, Xue, M. Fluorescence imaging-based methods for single-cell protein analysis. Anal Bioanal Chem. 2019; :. doi: 10.1007/s00216-019-01694-5. PubMed PMID:30854595 .

Chen, H, Ye, F, Guo, G. Revolutionizing immunology with single-cell RNA sequencing. Cell. Mol. Immunol. 2019;16 (3):242-249. doi: 10.1038/s41423-019-0214-4. PubMed PMID:30796351 .

Dwivedi, S, Purohit, P, Misra, R, Lingeswaran, M, Vishnoi, JR, Pareek, P et al.. Single Cell Omics of Breast Cancer: An Update on Characterization and Diagnosis. Indian J Clin Biochem. 2019;34 (1):3-18. doi: 10.1007/s12291-019-0811-0. PubMed PMID:30728668 PubMed Central PMC6346617.

Stévant, I, Kühne, F, Greenfield, A, Chaboissier, MC, Dermitzakis, ET, Nef, S et al.. Dissecting Cell Lineage Specification and Sex Fate Determination in Gonadal Somatic Cells Using Single-Cell Transcriptomics. Cell Rep. 2019;26 (12):3272-3283.e3. doi: 10.1016/j.celrep.2019.02.069. PubMed PMID:30893600 .

Yap, L, Wang, JW, Moreno-Moral, A, Chong, LY, Sun, Y, Harmston, N et al.. In Vivo Generation of Post-infarct Human Cardiac Muscle by Laminin-Promoted Cardiovascular Progenitors. Cell Rep. 2019;26 (12):3231-3245.e9. doi: 10.1016/j.celrep.2019.02.083. PubMed PMID:30893597 .

Grive, KJ, Hu, Y, Shu, E, Grimson, A, Elemento, O, Grenier, JK et al.. Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing. PLoS Genet. 2019;15 (3):e1007810. doi: 10.1371/journal.pgen.1007810. PubMed PMID:30893341 .

Fend-Guella, DL, von Kopylow, K, Spiess, AN, Schulze, W, Salzbrunn, A, Diederich, S et al.. The DNA methylation profile of human spermatogonia at single-cell- and single-allele-resolution refutes its role in spermatogonial stem cell function and germ cell differentiation. Mol. Hum. Reprod. 2019; :. doi: 10.1093/molehr/gaz017. PubMed PMID:30892608 .

Noren, BE, Shaha, RK, Stenquist, AT, Frick, CP, Oakey, JS. Cell Printing in Complex Hydrogel Scaffolds. IEEE Trans Nanobioscience. 2019; :. doi: 10.1109/TNB.2019.2905517. PubMed PMID:30892231 .