Publications

Tsankov, AM, Wadsworth, MH 2nd, Akopian, V, Charlton, J, Allon, SJ, Arczewska, A et al.. Loss of DNA methyltransferase activity in primed human ES cells triggers increased cell-cell variability and transcriptional repression. Development. 2019;146 (19):. doi: 10.1242/dev.174722. PubMed PMID:31515224 .

Julien, JP, Wardemann, H. Antibodies against Plasmodium falciparum malaria at the molecular level. Nat. Rev. Immunol. 2019; :. doi: 10.1038/s41577-019-0209-5. PubMed PMID:31462718 .

Laurentino, S, Heckmann, L, Di Persio, S, Li, X, Meyer Zu Hörste, G, Wistuba, J et al.. High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting. Clin Epigenetics. 2019;11 (1):127. doi: 10.1186/s13148-019-0720-3. PubMed PMID:31462300 PubMed Central PMC6714305.

Parra, RG, Papadopoulos, N, Ahumada-Arranz, L, Kholtei, JE, Mottelson, N, Horokhovsky, Y et al.. Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Res. 2019; :. doi: 10.1093/nar/gkz706. PubMed PMID:31428793 .

Uzbas, F, Opperer, F, Sönmezer, C, Shaposhnikov, D, Sass, S, Krendl, C et al.. BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis. Genome Biol. 2019;20 (1):155. doi: 10.1186/s13059-019-1748-6. PubMed PMID:31387612 PubMed Central PMC6683345.

Tsankov, AM, Wadsworth, MH 2nd, Akopian, V, Charlton, J, Allon, SJ, Arczewska, A et al.. Loss of DNA methyltransferase activity in primed human ES cells triggers increased cell-cell variability and transcriptional repression. Development. 2019;146 (19):. doi: 10.1242/dev.174722. PubMed PMID:31515224 .

List, M, Dehghani Amirabad, A, Kostka, D, Schulz, MH. Large-scale inference of competing endogenous RNA networks with sparse partial correlation. Bioinformatics. 2019;35 (14):i596-i604. doi: 10.1093/bioinformatics/btz314. PubMed PMID:31510670 PubMed Central PMC6612827.

Ellrott, K, Buchanan, A, Creason, A, Mason, M, Schaffter, T, Hoff, B et al.. Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges. Genome Biol. 2019;20 (1):195. doi: 10.1186/s13059-019-1794-0. PubMed PMID:31506093 .

Elwakeel, E, Brüggemann, M, Fink, AF, Schulz, MH, Schmid, T, Savai, R et al.. Phenotypic Plasticity of Fibroblasts during Mammary Carcinoma Development. Int J Mol Sci. 2019;20 (18):. doi: 10.3390/ijms20184438. PubMed PMID:31505876 .

Zhou, X, Lutteropp, S, Czech, L, Stamatakis, A, von Looz, M, Rokas, A et al.. Quartet-based computations of internode certainty provide robust measures of phylogenetic incongruence. Syst. Biol. 2019; :. doi: 10.1093/sysbio/syz058. PubMed PMID:31504977 .

Keller, L, Pantel, K. Unravelling tumour heterogeneity by single-cell profiling of circulating tumour cells. Nat. Rev. Cancer. 2019; :. doi: 10.1038/s41568-019-0180-2. PubMed PMID:31455893 .

Nathan, A, Baglaenko, Y, Fonseka, CY, Beynor, JI, Raychaudhuri, S. Multimodal single-cell approaches shed light on T cell heterogeneity. Curr. Opin. Immunol. 2019;61 :17-25. doi: 10.1016/j.coi.2019.07.002. PubMed PMID:31430664 .

Catala, GN, Bestwick, CS, Russell, WR, Tortora, K, Giovannelli, L, Moyer, MP et al.. Folate, genomic stability and colon cancer: The use of single cell gel electrophoresis in assessing the impact of folate in vitro, in vivo and in human biomonitoring. Mutat. Res. 2019;843 :73-80. doi: 10.1016/j.mrgentox.2018.08.012. PubMed PMID:31421742 .

Marcy, G, Raineteau, O. Concise Review: Contributions of Single-Cell Approaches for Probing Heterogeneity and Dynamics of Neural Progenitors Throughout Life. Stem Cells. 2019; :. doi: 10.1002/stem.3071. PubMed PMID:31408232 .

Tang, X, Huang, Y, Lei, J, Luo, H, Zhu, X. The single-cell sequencing: new developments and medical applications. Cell Biosci. 2019;9 :53. doi: 10.1186/s13578-019-0314-y. PubMed PMID:31391919 PubMed Central PMC6595701.

Slapšytė, G, Dedonytė, V, Adamonienė, A, Lazutka, JR, Kazlauskaitė, J, Ragažinskienė, O et al.. Genotoxic properties of Betonica officinalis, Gratiola officinalis, Vincetoxicum luteum and Vincetoxicum hirundinaria extracts. Food Chem. Toxicol. 2019; :110815. doi: 10.1016/j.fct.2019.110815. PubMed PMID:31520668 .

Konthapakdee, N, Grundy, L, O’Donnell, T, Garcia-Caraballo, S, Brierley, SM, Grundy, D et al.. Serotonin exerts a direct modulatory role on bladder afferent firing in mice. J. Physiol. (Lond.). 2019; :. doi: 10.1113/JP278751. PubMed PMID:31520534 .

Bhattacherjee, A, Djekidel, MN, Chen, R, Chen, W, Tuesta, LM, Zhang, Y et al.. Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction. Nat Commun. 2019;10 (1):4169. doi: 10.1038/s41467-019-12054-3. PubMed PMID:31519873 .

Zhu, Y, Liu, R, Yang, Z. Redesigning the T-probe for mass spectrometry analysis of online lysis of non-adherent single cells. Anal. Chim. Acta. 2019;1084 :53-59. doi: 10.1016/j.aca.2019.07.059. PubMed PMID:31519234 .

Llaó Cid, L, Hanna, BS, Iskar, M, Roessner, PM, Öztürk, S, Lichter, P et al.. CD8⁺ T-cells of CLL-bearing mice acquire a transcriptional program of T-cell activation and exhaustion. Leuk. Lymphoma. 2019; :1-6. doi: 10.1080/10428194.2019.1660972. PubMed PMID:31519123 .