Suppinger, S., Zinner, M., Aizarani, N., Lukonin, I., Ortiz, R., Azzi, C., Stadler, M. B., Vianello, S., Palla, G., Kohler, H., Mayran, A., Lutolf, M. P., & Liberali, P. (2023). Multimodal characterization of murine gastruloid development. Cell stem cell, S1934-5909(23)00170-4. Advance online publication. https://doi.org/10.1016/j.stem.2023.04.018
Lazzardi, S., Valle, F., Mazzolini, A., Scialdone, A., Caselle, M., & Osella, M. (2023). Emergent statistical laws in single-cell transcriptomic data. Physical review. E, 107(4-1), 044403. https://doi.org/10.1103/PhysRevE.107.044403
Piwecka, M., Rajewsky, N., & Rybak-Wolf, A. (2023). Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease. Nature reviews. Neurology, 1–17. Advance online publication. https://doi.org/10.1038/s41582-023-00809-y
Lubatti, G., Stock, M., Iturbide, A., Ruiz Tejada Segura, M. L., Riepl, M., Tyser, R. C. V., Danese, A., Colomé-Tatché, M., Theis, F. J., Srinivas, S., Torres-Padilla, M. E., & Scialdone, A. (2023). CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data. Development (Cambridge, England), dev.201264. Advance online publication. https://doi.org/10.1242/dev.201264
Lowenstein, E. D., Ruffault, P. L., Misios, A., Osman, K. L., Li, H., Greenberg, R. S., Thompson, R., Song, K., Dietrich, S., Li, X., Vladimirov, N., Woehler, A., Brunet, J. F., Zampieri, N., Kühn, R., Liberles, S. D., Jia, S., Lewin, G. R., Rajewsky, N., Lever, T. E., … Birchmeier, C. (2023). Prox2 and Runx3 vagal sensory neurons regulate esophageal motility. Neuron, S0896-6273(23)00332-X. Advance online publication. https://doi.org/10.1016/j.neuron.2023.04.025
Lin, M., Hartl, K., Heuberger, J., Beccaceci, G., Berger, H., Li, H., Liu, L., Müllerke, S., Conrad, T., Heymann, F., Woehler, A., Tacke, F., Rajewsky, N., & Sigal, M. (2023). Establishment of gastrointestinal assembloids to study the interplay between epithelial crypts and their mesenchymal niche. Nature communications, 14(1), 3025. https://doi.org/10.1038/s41467-023-38780-3
Kalgudde Gopal, S., Dai, R., Stefanska, A. M., Ansari, M., Zhao, J., Ramesh, P., Bagnoli, J. W., Correa-Gallegos, D., Lin, Y., Christ, S., Angelidis, I., Lupperger, V., Marr, C., Davies, L. C., Enard, W., Machens, H. G., Schiller, H. B., Jiang, D., & Rinkevich, Y. (2023). Wound infiltrating adipocytes are not myofibroblasts. Nature communications, 14(1), 3020. https://doi.org/10.1038/s41467-023-38591-6
Labus, J., Winata, J., Schmidt, T., Nicolai, J., Zwaag, S. V., Sveric, K., Wilbring, M., Scholz, M., & Fassl, J. (2023). Normal range of intraoperative three-dimensionally derived right ventricular free-wall strain in coronary artery bypass surgery patients. Echocardiography (Mount Kisco, N.Y.), 10.1111/echo.15624. Advance online publication. https://doi.org/10.1111/echo.15624
Berezhnoy, G., Bissinger, R., Liu, A., Cannet, C., Schäfer, H., Kienzle, K., Bitzer, M., Häberle, H., Göpel, S., Trautwein, C., & Singh, Y. (2023). Maintained imbalance of triglycerides, apolipoproteins, energy metabolites and cytokines in long-term COVID-19 syndrome patients. Frontiers in immunology, 14, 1144224. https://doi.org/10.3389/fimmu.2023.1144224
Reinhardt, S. C. M., Masullo, L. A., Baudrexel, I., Steen, P. R., Kowalewski, R., Eklund, A. S., Strauss, S., Unterauer, E. M., Schlichthaerle, T., Strauss, M. T., Klein, C., & Jungmann, R. (2023). Ångström-resolution fluorescence microscopy. Nature, 617(7962), 711–716. https://doi.org/10.1038/s41586-023-05925-9
Li, M. Harnessing atomic force microscopy-based single-cell analysis to advance physical oncology. Microsc Res Tech. 2023; :. doi: 10.1002/jemt.24467. PubMed PMID:38053519 .
Levinsohn, J, Li, S, Ha, E, Susztak, K. Combing Genome-Wide Association Studies and Single-Cell Analysis to Elucidate the Mechanisms of Kidney Disease: Proceedings of the Henry Shavelle Professorship. Glomerular Dis. 2023;3 (1):258-265. doi: 10.1159/000534678. PubMed PMID:38033715 PubMed Central PMC10686632.
Kim, H, Choi, H, Lee, D, Kim, J. A review on gene regulatory network reconstruction algorithms based on single cell RNA sequencing. Genes Genomics. 2023; :. doi: 10.1007/s13258-023-01473-8. PubMed PMID:38032470 .
Sun, X, Yu, Y, Qian, K, Wang, J, Huang, L. Recent Progress in Mass Spectrometry-Based Single-Cell Metabolic Analysis. Small Methods. 2023; :e2301317. doi: 10.1002/smtd.202301317. PubMed PMID:38032130 .
Paas-Oliveros, E, Hernández-Lemus, E, de Anda-Jáuregui, G. Computational single cell oncology: state of the art. Front Genet. 2023;14 :1256991. doi: 10.3389/fgene.2023.1256991. PubMed PMID:38028624 PubMed Central PMC10663273.
Search PubMedZhang, X., Xu, H., Yu, J., Cui, J., Chen, Z., Li, Y., Niu, Y., Wang, S., Ran, S., Zou, Y., Wu, J., & Xia, J. (2023). Immune Regulation of the Liver Through the PCSK9/CD36 Pathway During Heart Transplant Rejection. Circulation, 10.1161/CIRCULATIONAHA.123.062788. Advance online publication. https://doi.org/10.1161/CIRCULATIONAHA.123.062788
Zhan, X., Qiu, T., Zhang, H., Kailin, H., Liang, X., Chen, C., Wang, Z., Wu, Q., Wang, X., Li, X. L., Wang, M., Feng, S., Zeng, H., Yu, C., Wang, H., & Shen, C. (2023). Mass spectrometry imaging and single-cell transcriptional profiling reveal the tissue-specific regulation of bioactive ingredient biosynthesis in Taxus leaves. Plant communications, 100630. Advance online publication. https://doi.org/10.1016/j.xplc.2023.100630
Chen, X., Peng, C., Chen, Y., Ding, B., Liu, S., Song, Y., Li, Y., Sun, B., & Yang, R. (2023). A T-cell-related signature for prognostic stratification and immunotherapy response in hepatocellular carcinoma based on transcriptomics and single-cell sequencing. BMC bioinformatics, 24(1), 216. https://doi.org/10.1186/s12859-023-05344-7
Zhu, J., & Yang, Y. (2023). scMEB: a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data. BMC genomics, 24(1), 280. https://doi.org/10.1186/s12864-023-09374-6
Wang, P., Wang, Y., & Wang, Y. (2023). Ferroptosis patterns modulate immunocyte communication in tumor microenvironments: clinical value and therapeutic guidance of lung adenocarcinoma. Functional & integrative genomics, 23(2), 181. https://doi.org/10.1007/s10142-023-01100-5