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Publications

Single cell publications of our SCOG partners
Further publications of our SCOG partners
Single cell reviews
Other single cell publications
Single cell publications of our SCOG partners

Rehm, A., Wirges, A., Hoser, D., Fischer, C., Herda, S., Gerlach, K., Sauer, S., Willimsky, G., & Höpken, U. E. (2022). EBAG9 controls CD8+ T cell memory formation responding to tumor challenge in mice. JCI insight, e155534. Advance online publication. https://doi.org/10.1172/jci.insight.155534

Liu, Z., Kilic, G., Li, W., Bulut, O., Gupta, M. K., Zhang, B., Qi, C., Peng, H., Tsay, H. C., Soon, C. F., Mekonnen, Y. A., Ferreira, A. V., van der Made, C. I., van Cranenbroek, B., Koenen, H., Simonetti, E., Diavatopoulos, D., de Jonge, M. I., Müller, L., Schaal, H., … Li, Y. (2022). Multi-Omics Integration Reveals Only Minor Long-Term Molecular and Functional Sequelae in Immune Cells of Individuals Recovered From COVID-19. Frontiers in immunology, 13, 838132. https://doi.org/10.3389/fimmu.2022.838132

Bartsch, P., Kilian, C., Hellmig, M., Paust, H. J., Borchers, A., Sivayoganathan, A., Enk, L., Zhao, Y., Shaikh, N., Büttner, H., Wong, M. N., Puelles, V. G., Wiech, T., Flavell, R., Huber, T. B., Turner, J. E., Bonn, S., Huber, S., Gagliani, N., Mittrücker, H. W., … Krebs, C. F. (2022). Th17 cell plasticity towards a T-bet-dependent Th1 phenotype is required for bacterial control in Staphylococcus aureus infection. PLoS pathogens, 18(4), e1010430. Advance online publication. https://doi.org/10.1371/journal.ppat.1010430

Anjos-Afonso, F., Buettner, F., Mian, S. A., Rhys, H., Perez-Lloret, J., Garcia-Albornoz, M., Rastogi, N., Ariza-McNaughton, L., & Bonnet, D. (2022). Single cell analyses identify a highly regenerative and homogenous human CD34+ hematopoietic stem cell population. Nature communications, 13(1), 2048. https://doi.org/10.1038/s41467-022-29675-w

Capolupo, L., Khven, I., Lederer, A. R., Mazzeo, L., Glousker, G., Ho, S., Russo, F., Montoya, J. P., Bhandari, D. R., Bowman, A. P., Ellis, S. R., Guiet, R., Burri, O., Detzner, J., Muthing, J., Homicsko, K., Kuonen, F., Gilliet, M., Spengler, B., Heeren, R., … D’Angelo, G. (2022). Sphingolipids control dermal fibroblast heterogeneity. Science (New York, N.Y.), 376(6590), eabh1623. https://doi.org/10.1126/science.abh1623

Bangert, C., Villazala-Merino, S., Fahrenberger, M., Krausgruber, T., Bauer, W. M., Stanek, V., Campion, N. J., Bartosik, T., Quint, T., Regelsberger, G., Niederberger-Leppin, V., Bock, C., Schneider, S., & Eckl-Dorna, J. (2022). Comprehensive Analysis of Nasal Polyps Reveals a More Pronounced Type 2 Transcriptomic Profile of Epithelial Cells and Mast Cells in Aspirin-Exacerbated Respiratory Disease. Frontiers in immunology, 13, 850494. https://doi.org/10.3389/fimmu.2022.850494

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Further publications of our SCOG partners

Verstockt, B., Volk, V., Jaeckel, C., Alsoud, D., Sabino, J., Nikolaus, S., Outtier, A., Krönke, N., Feuerhake, F., De Hertogh, G., Rosenstiel, P., Vermeire, S., Schreiber, S., Ferrante, M., & Aden, K. (2022). Longitudinal monitoring of STAT3 phosphorylation and histologic outcome of tofacitinib therapy in patients with ulcerative colitis. Alimentary pharmacology & therapeutics, 10.1111/apt.16955. Advance online publication. https://doi.org/10.1111/apt.16955

Alborzinia, H., Flórez, A. F., Kreth, S., Brückner, L. M., Yildiz, U., Gartlgruber, M., Odoni, D. I., Poschet, G., Garbowicz, K., Shao, C., Klein, C., Meier, J., Zeisberger, P., Nadler-Holly, M., Ziehm, M., Paul, F., Burhenne, J., Bell, E., Shaikhkarami, M., Würth, R., … Westermann, F. (2022). MYCN mediates cysteine addiction and sensitizes neuroblastoma to ferroptosis. Nature cancer, 3(4), 471–485. https://doi.org/10.1038/s43018-022-00355-4

Schmoller, K. M., Lanz, M. C., Kim, J., Koivomagi, M., Qu, Y., Tang, C., Kukhtevich, I. V., Schneider, R., Rudolf, F., Moreno, D. F., Aldea, M., Lucena, R., & Skotheim, J. M. (2022). Whi5 is diluted and protein synthesis does not dramatically increase in pre-Start G1. Molecular biology of the cell, 33(5), lt1. https://doi.org/10.1091/mbc.E21-01-0029

Hassel, J. C., Schank, T. E., Smetak, H., Mühlbauer, J., Salzmann, M., Machiraju, D., Menzer, C., Lang, K., König, L., Haefner, M. F., Hülsmeyer, I., Kohler, C., Spang, R., Enk, A., Debus, J., & Beckhove, P. (2022). Evaluation of radio-immunotherapy sequence on immunological responses and clinical outcomes in patients with melanoma brain metastases (ELEKTRA). Oncoimmunology, 11(1), 2066609. https://doi.org/10.1080/2162402X.2022.2066609

Kyriakopoulos, C., Nordström, K., Kramer, P. L., Gottfreund, J. Y., Salhab, A., Arand, J., Müller, F., von Meyenn, F., Ficz, G., Reik, W., Wolf, V., Walter, J., & Giehr, P. (2022). A comprehensive approach for genome-wide efficiency profiling of DNA modifying enzymes. Cell reports methods, 2(3), 100187. https://doi.org/10.1016/j.crmeth.2022.100187

Chin, S. S., Guillen, E., Chorro, L., Achar, S., Ng, K., Oberle, S., Alfei, F., Zehn, D., Altan-Bonnet, G., Delahaye, F., & Lauvau, G. (2022). T cell receptor and IL-2 signaling strength control memory CD8+ T cell functional fitness via chromatin remodeling. Nature communications, 13(1), 2240. https://doi.org/10.1038/s41467-022-29718-2

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Single cell reviews

Qi, R, Zou, Q. Trends and Potential of Machine Learning and Deep Learning in Drug Study at Single-Cell Level. Research (Wash D C). 2023;6 :0050. doi: 10.34133/research.0050. PubMed PMID:36930772 PubMed Central PMC10013796.

Han, X, Luo, FH. Application of single-cell RNA sequencing in probing oligodendroglia heterogeneity and neurological disorders. Yi Chuan. 2023;45 (3):198-211. doi: 10.16288/j.yczz.22-306. PubMed PMID:36927646 .

Sommer, ER, Napoli, GC, Chau, CH, Price, DK, Figg, WD. Targeting the metastatic niche: Single-cell lineage tracing in prime time. iScience. 2023;26 (3):106174. doi: 10.1016/j.isci.2023.106174. PubMed PMID:36895653 PubMed Central PMC9988656.

Maniyadath, B, Zhang, Q, Gupta, RK, Mandrup, S. Adipose tissue at single-cell resolution. Cell Metab. 2023;35 (3):386-413. doi: 10.1016/j.cmet.2023.02.002. PubMed PMID:36889280 .

Zhao, ZB, Bian, ZH, Lin, ZM, Wu, SF, Long, J, Cui, Y et al.. Single-Cell Analysis of Patients with Axial Spondyloarthritis After Anti-TNFα Treatment: Experimental Data and Review of the Literature. Clin Rev Allergy Immunol. 2023; :. doi: 10.1007/s12016-023-08959-z. PubMed PMID:36884135 .

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Other single cell publications

Geurtzen, K., López-Delgado, A. C., Duseja, A., Kurzyukova, A., & Knopf, F. (2022). Laser-mediated osteoblast ablation triggers a pro-osteogenic inflammatory response regulated by reactive oxygen species and glucocorticoid signaling in zebrafish. Development (Cambridge, England), 149(8), dev199803. https://doi.org/10.1242/dev.199803

Chen, J., Huang, X. R., Yang, F., Yiu, W. H., Yu, X., Tang, S., & Lan, H. Y. (2022). Single-cell RNA Sequencing Identified Novel Nr4a1+ Ear2+ Anti-Inflammatory Macrophage Phenotype under Myeloid-TLR4 Dependent Regulation in Anti-Glomerular Basement Membrane (GBM) Crescentic Glomerulonephritis (cGN). Advanced science (Weinheim, Baden-Wurttemberg, Germany), e2200668. Advance online publication. https://doi.org/10.1002/advs.202200668

Hsieh, H. C., Lin, P. T., & Sung, K. B. (2022). Characterization and identification of cell death dynamics by quantitative phase imaging. Journal of biomedical optics, 27(4), 10.1117/1.JBO.27.4.046502. https://doi.org/10.1117/1.JBO.27.4.046502

Wang, R., Mao, Y., Wang, W., Zhou, X., Wang, W., Gao, S., Li, J., Wen, L., Fu, W., & Tang, F. (2022). Systematic evaluation of colorectal cancer organoid system by single-cell RNA-Seq analysis. Genome biology, 23(1), 106. https://doi.org/10.1186/s13059-022-02673-3

Li, Z., Zhang, Q., Wang, P., Liu, F., Song, Y., & Wen, C. F. (2022). Gene Selection in a Single Cell Gene Space Based on D-S Evidence Theory. Interdisciplinary sciences, computational life sciences, 10.1007/s12539-022-00518-y. Advance online publication. https://doi.org/10.1007/s12539-022-00518-y

Calzetti, F., Finotti, G., Tamassia, N., Bianchetto-Aguilera, F., Castellucci, M., Canè, S., Lonardi, S., Cavallini, C., Matte, A., Gasperini, S., Signoretto, I., Benedetti, F., Bonifacio, M., Vermi, W., Ugel, S., Bronte, V., Tecchio, C., Scapini, P., & Cassatella, M. A. (2022). CD66b–CD64dimCD115– cells in the human bone marrow represent neutrophil-committed progenitors. Nature immunology, 10.1038/s41590-022-01189-z. Advance online publication. https://doi.org/10.1038/s41590-022-01189-z

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