Publications

Sparks, TM, Harabula, I, Pombo, A. Evolving methodologies and concepts in 4D nucleome research. Curr. Opin. Cell Biol. 2020;64 :105-111. doi: 10.1016/j.ceb.2020.04.005. PubMed PMID:32473574 .

Messerschmidt, C, Obermayer, B, Klinghammer, K, Ochsenreither, S, Treue, D, Stenzinger, A et al.. Distinct immune evasion in APOBEC-enriched, HPV-negative HNSCC. Int. J. Cancer. 2020; :. doi: 10.1002/ijc.33123. PubMed PMID:32468570 .

Khrameeva, E, Kurochkin, I, Han, D, Guijarro, P, Kanton, S, Santel, M et al.. Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains. Genome Res. 2020;30 (5):776-789. doi: 10.1101/gr.256958.119. PubMed PMID:32424074 .

Ziegler, CGK, Allon, SJ, Nyquist, SK, Mbano, IM, Miao, VN, Tzouanas, CN et al.. SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues. Cell. 2020;181 (5):1016-1035.e19. doi: 10.1016/j.cell.2020.04.035. PubMed PMID:32413319 PubMed Central PMC7252096.

Solovey, M, Scialdone, A. COMUNET: a tool to explore and visualize intercellular communication. Bioinformatics. 2020; :. doi: 10.1093/bioinformatics/btaa482. PubMed PMID:32399572 .

Becker, M, Noll-Puchta, H, Amend, D, Nolte, F, Fuchs, C, Jeremias, I et al.. CLUE: a bioinformatic and wet-lab pipeline for multiplexed cloning of custom sgRNA libraries. Nucleic Acids Res. 2020; :. doi: 10.1093/nar/gkaa459. PubMed PMID:32479629 .

Sparks, TM, Harabula, I, Pombo, A. Evolving methodologies and concepts in 4D nucleome research. Curr. Opin. Cell Biol. 2020;64 :105-111. doi: 10.1016/j.ceb.2020.04.005. PubMed PMID:32473574 .

Ginno, PA, Gaidatzis, D, Feldmann, A, Hoerner, L, Imanci, D, Burger, L et al.. A genome-scale map of DNA methylation turnover identifies site-specific dependencies of DNMT and TET activity. Nat Commun. 2020;11 (1):2680. doi: 10.1038/s41467-020-16354-x. PubMed PMID:32471981 .

Melo, US, Schöpflin, R, Acuna-Hidalgo, R, Mensah, MA, Fischer-Zirnsak, B, Holtgrewe, M et al.. Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases. Am. J. Hum. Genet. 2020; :. doi: 10.1016/j.ajhg.2020.04.016. PubMed PMID:32470376 .

Pott, J, Beutner, F, Horn, K, Kirsten, H, Olischer, K, Wirkner, K et al.. Genome-wide analysis of carotid plaque burden suggests a role of IL5 in men. PLoS ONE. 2020;15 (5):e0233728. doi: 10.1371/journal.pone.0233728. PubMed PMID:32469969 .

Liu, L, Chen, D, Wang, J, Chen, J. Advances of Single-Cell Protein Analysis. Cells. 2020;9 (5):. doi: 10.3390/cells9051271. PubMed PMID:32443882 .

Shao, X, Lu, X, Liao, J, Chen, H, Fan, X. New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data. Protein Cell. 2020; :. doi: 10.1007/s13238-020-00727-5. PubMed PMID:32435978 .

Xiong, H, He, A. Single-Cell Transcriptomic Analysis of Cardiac Progenitor Differentiation. Curr Cardiol Rep. 2020;22 (6):38. doi: 10.1007/s11886-020-01285-2. PubMed PMID:32430537 .

Liu, W, He, H, Zheng, SY. Microfluidics in Single-Cell Virology: Technologies and Applications. Trends Biotechnol. 2020; :. doi: 10.1016/j.tibtech.2020.04.010. PubMed PMID:32430227 .

Chen, R, Alanis, K, Welle, TM, Shen, M. Nanoelectrochemistry in the study of single-cell signaling. Anal Bioanal Chem. 2020; :. doi: 10.1007/s00216-020-02655-z. PubMed PMID:32424795 .

Schulz, M, Michels, B, Niesel, K, Stein, S, Farin, H, Rödel, F et al.. Cellular and Molecular Changes of Brain Metastases-Associated Myeloid Cells during Disease Progression and Therapeutic Response. iScience. 2020;23 (6):101178. doi: 10.1016/j.isci.2020.101178. PubMed PMID:32480132 .

Bost, P, Giladi, A, Liu, Y, Bendjelal, Y, Xu, G, David, E et al.. Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients. Cell. 2020; :. doi: 10.1016/j.cell.2020.05.006. PubMed PMID:32479746 .

Bonaccorso, P, Bugarin, C, Buracchi, C, Fazio, G, Biondi, A, Lo Nigro, L et al.. Single-cell profiling of pediatric T-cell acute lymphoblastic leukemia: Impact of PTEN exon 7 mutation on PI3K/Akt and JAK-STAT signaling pathways. Cytometry B Clin Cytom. 2020; :. doi: 10.1002/cyto.b.21882. PubMed PMID:32479694 .

Wu, F, Shim, J, Tan, C. Orthogonal tuning of gene expression noise using CRISPR-Cas. Nucleic Acids Res. 2020; :. doi: 10.1093/nar/gkaa451. PubMed PMID:32479612 .

Mohanraj, S, Díaz-Mejía, JJ, Pham, MD, Elrick, H, Husić, M, Rashid, S et al.. CReSCENT: CanceR Single Cell ExpressioN Toolkit. Nucleic Acids Res. 2020; :. doi: 10.1093/nar/gkaa437. PubMed PMID:32479601 .