Publications

Fuchs, YF, Sharma, V, Eugster, A, Kraus, G, Morgenstern, R, Dahl, A et al.. Gene Expression-Based Identification of Antigen-Responsive CD8⁺ T Cells on a Single-Cell Level. Front Immunol. 2019;10 :2568. doi: 10.3389/fimmu.2019.02568. PubMed PMID:31781096 PubMed Central PMC6851025.

Bakhti, M, Scheibner, K, Tritschler, S, Bastidas-Ponce, A, Tarquis-Medina, M, Theis, FJ et al.. Establishment of a high-resolution 3D modeling system for studying pancreatic epithelial cell biology in vitro. Mol Metab. 2019;30 :16-29. doi: 10.1016/j.molmet.2019.09.005. PubMed PMID:31767167 PubMed Central PMC6812400.

Nitzan, M, Karaiskos, N, Friedman, N, Rajewsky, N. Gene expression cartography. Nature. 2019;576 (7785):132-137. doi: 10.1038/s41586-019-1773-3. PubMed PMID:31748748 .

Wyler, E, Franke, V, Menegatti, J, Kocks, C, Boltengagen, A, Praktiknjo, S et al.. Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program. Nat Commun. 2019;10 (1):4878. doi: 10.1038/s41467-019-12894-z. PubMed PMID:31653857 PubMed Central PMC6814756.

Günther, P, Schultze, JL. Mind the Map: Technology Shapes the Myeloid Cell Space. Front Immunol. 2019;10 :2287. doi: 10.3389/fimmu.2019.02287. PubMed PMID:31636632 PubMed Central PMC6787770.

Cnossen, J, Hinsdale, T, Thorsen, RØ, Siemons, M, Schueder, F, Jungmann, R et al.. Localization microscopy at doubled precision with patterned illumination. Nat. Methods. 2019; :. doi: 10.1038/s41592-019-0657-7. PubMed PMID:31819263 .

Berndt, N, Egners, A, Mastrobuoni, G, Vvedenskaya, O, Fragoulis, A, Dugourd, A et al.. Kinetic modelling of quantitative proteome data predicts metabolic reprogramming of liver cancer. Br. J. Cancer. 2019; :. doi: 10.1038/s41416-019-0659-3. PubMed PMID:31819186 .

Poirel, O, Mamer, LE, Herman, MA, Arnulf-Kempcke, M, Kervern, M, Potier, B et al.. LSP5-2157 a new inhibitor of vesicular glutamate transporters. Neuropharmacology. 2019; :107902. doi: 10.1016/j.neuropharm.2019.107902. PubMed PMID:31811873 .

Jia, T, Chu, C, Liu, Y, van Dongen, J, Papastergios, E, Armstrong, NJ et al.. Epigenome-wide meta-analysis of blood DNA methylation and its association with subcortical volumes: findings from the ENIGMA Epigenetics Working Group. Mol. Psychiatry. 2019; :. doi: 10.1038/s41380-019-0605-z. PubMed PMID:31811260 .

Gier, S, Simon, M, Gasparoni, G, Khalifa, S, Schulz, MH, Schmitt, MJ et al.. Yeast viral killer toxin K1 induces specific host cell adaptions via intrinsic selection pressure. Appl. Environ. Microbiol. 2019; :. doi: 10.1128/AEM.02446-19. PubMed PMID:31811035 .

Dusny, C, Grünberger, A. Microfluidic single-cell analysis in biotechnology: from monitoring towards understanding. Curr. Opin. Biotechnol. 2019;63 :26-33. doi: 10.1016/j.copbio.2019.11.001. PubMed PMID:31809975 .

Xu, G, Liu, Y, Li, H, Liu, L, Zhang, S, Zhang, Z et al.. Dissecting the human immune system with single cell RNA sequencing technology. J. Leukoc. Biol. 2019; :. doi: 10.1002/JLB.5MR1019-179R. PubMed PMID:31803960 .

Amezquita, RA, Lun, ATL, Becht, E, Carey, VJ, Carpp, LN, Geistlinger, L et al.. Orchestrating single-cell analysis with Bioconductor. Nat. Methods. 2019; :. doi: 10.1038/s41592-019-0654-x. PubMed PMID:31792435 .

Rich-Griffin, C, Stechemesser, A, Finch, J, Lucas, E, Ott, S, Schäfer, P et al.. Single-Cell Transcriptomics: A High-Resolution Avenue for Plant Functional Genomics. Trends Plant Sci. 2019; :. doi: 10.1016/j.tplants.2019.10.008. PubMed PMID:31780334 .

Holding, AN, Cook, HV, Markowetz, F. Data generation and network reconstruction strategies for single cell transcriptomic profiles of CRISPR-mediated gene perturbations. Biochim Biophys Acta Gene Regul Mech. 2019; :194441. doi: 10.1016/j.bbagrm.2019.194441. PubMed PMID:31756390 .

Cervera, J, Meseguer, S, Levin, M, Mafe, S. Bioelectrical model of head-tail patterning based on cell ion channels and intercellular gap junctions. Bioelectrochemistry. 2019;132 :107410. doi: 10.1016/j.bioelechem.2019.107410. PubMed PMID:31821903 .

Wang, Y, Xu, J, Kong, L, Liu, T, Yi, L, Wang, H et al.. Raman-deuterium isotope probing to study metabolic activities of single bacterial cells in human intestinal microbiota. Microb Biotechnol. 2019; :. doi: 10.1111/1751-7915.13519. PubMed PMID:31821744 .

Marcovich, I, Moglie, MJ, Freixas, AEC, Trigila, AP, Franchini, LF, Plazas, PV et al.. Distinct evolutionary trajectories of neuronal and hair cell nicotinic acetylcholine receptors. Mol. Biol. Evol. 2019; :. doi: 10.1093/molbev/msz290. PubMed PMID:31821508 .

Li, L, Chen, H, Marin, D, Xi, Y, Miao, Q, Lv, J et al.. A novel immature natural killer cell subpopulation predicts relapse after cord blood transplantation. Blood Adv. 2019;3 (23):4117-4130. doi: 10.1182/bloodadvances.2019000835. PubMed PMID:31821460 .

Chen, YC, Jung, S, Zhang, Z, Wicha, MS, Yoon, E. Co-culture of functionally enriched cancer stem-like cells and cancer-associated fibroblasts for single-cell whole transcriptome analysis. Integr Biol (Camb). 2019; :. doi: 10.1093/intbio/zyz029. PubMed PMID:31820801 .