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Publications

Single cell publications of our SCOG partners
Further publications of our SCOG partners
Single cell reviews
Other single cell publications
Single cell publications of our SCOG partners

Suppinger, S., Zinner, M., Aizarani, N., Lukonin, I., Ortiz, R., Azzi, C., Stadler, M. B., Vianello, S., Palla, G., Kohler, H., Mayran, A., Lutolf, M. P., & Liberali, P. (2023). Multimodal characterization of murine gastruloid development. Cell stem cell, S1934-5909(23)00170-4. Advance online publication. https://doi.org/10.1016/j.stem.2023.04.018

Lazzardi, S., Valle, F., Mazzolini, A., Scialdone, A., Caselle, M., & Osella, M. (2023). Emergent statistical laws in single-cell transcriptomic data. Physical review. E, 107(4-1), 044403. https://doi.org/10.1103/PhysRevE.107.044403

Piwecka, M., Rajewsky, N., & Rybak-Wolf, A. (2023). Single-cell and spatial transcriptomics: deciphering brain complexity in health and disease. Nature reviews. Neurology, 1–17. Advance online publication. https://doi.org/10.1038/s41582-023-00809-y

Lubatti, G., Stock, M., Iturbide, A., Ruiz Tejada Segura, M. L., Riepl, M., Tyser, R. C. V., Danese, A., Colomé-Tatché, M., Theis, F. J., Srinivas, S., Torres-Padilla, M. E., & Scialdone, A. (2023). CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data. Development (Cambridge, England), dev.201264. Advance online publication. https://doi.org/10.1242/dev.201264

Lowenstein, E. D., Ruffault, P. L., Misios, A., Osman, K. L., Li, H., Greenberg, R. S., Thompson, R., Song, K., Dietrich, S., Li, X., Vladimirov, N., Woehler, A., Brunet, J. F., Zampieri, N., Kühn, R., Liberles, S. D., Jia, S., Lewin, G. R., Rajewsky, N., Lever, T. E., … Birchmeier, C. (2023). Prox2 and Runx3 vagal sensory neurons regulate esophageal motility. Neuron, S0896-6273(23)00332-X. Advance online publication. https://doi.org/10.1016/j.neuron.2023.04.025

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Further publications of our SCOG partners

Lin, M., Hartl, K., Heuberger, J., Beccaceci, G., Berger, H., Li, H., Liu, L., Müllerke, S., Conrad, T., Heymann, F., Woehler, A., Tacke, F., Rajewsky, N., & Sigal, M. (2023). Establishment of gastrointestinal assembloids to study the interplay between epithelial crypts and their mesenchymal niche. Nature communications, 14(1), 3025. https://doi.org/10.1038/s41467-023-38780-3

Kalgudde Gopal, S., Dai, R., Stefanska, A. M., Ansari, M., Zhao, J., Ramesh, P., Bagnoli, J. W., Correa-Gallegos, D., Lin, Y., Christ, S., Angelidis, I., Lupperger, V., Marr, C., Davies, L. C., Enard, W., Machens, H. G., Schiller, H. B., Jiang, D., & Rinkevich, Y. (2023). Wound infiltrating adipocytes are not myofibroblasts. Nature communications, 14(1), 3020. https://doi.org/10.1038/s41467-023-38591-6

Labus, J., Winata, J., Schmidt, T., Nicolai, J., Zwaag, S. V., Sveric, K., Wilbring, M., Scholz, M., & Fassl, J. (2023). Normal range of intraoperative three-dimensionally derived right ventricular free-wall strain in coronary artery bypass surgery patients. Echocardiography (Mount Kisco, N.Y.), 10.1111/echo.15624. Advance online publication. https://doi.org/10.1111/echo.15624

Berezhnoy, G., Bissinger, R., Liu, A., Cannet, C., Schäfer, H., Kienzle, K., Bitzer, M., Häberle, H., Göpel, S., Trautwein, C., & Singh, Y. (2023). Maintained imbalance of triglycerides, apolipoproteins, energy metabolites and cytokines in long-term COVID-19 syndrome patients. Frontiers in immunology, 14, 1144224. https://doi.org/10.3389/fimmu.2023.1144224

Reinhardt, S. C. M., Masullo, L. A., Baudrexel, I., Steen, P. R., Kowalewski, R., Eklund, A. S., Strauss, S., Unterauer, E. M., Schlichthaerle, T., Strauss, M. T., Klein, C., & Jungmann, R. (2023). Ångström-resolution fluorescence microscopy. Nature, 617(7962), 711–716. https://doi.org/10.1038/s41586-023-05925-9

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Single cell reviews

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Other single cell publications

Zhang, X., Xu, H., Yu, J., Cui, J., Chen, Z., Li, Y., Niu, Y., Wang, S., Ran, S., Zou, Y., Wu, J., & Xia, J. (2023). Immune Regulation of the Liver Through the PCSK9/CD36 Pathway During Heart Transplant Rejection. Circulation, 10.1161/CIRCULATIONAHA.123.062788. Advance online publication. https://doi.org/10.1161/CIRCULATIONAHA.123.062788

Zhan, X., Qiu, T., Zhang, H., Kailin, H., Liang, X., Chen, C., Wang, Z., Wu, Q., Wang, X., Li, X. L., Wang, M., Feng, S., Zeng, H., Yu, C., Wang, H., & Shen, C. (2023). Mass spectrometry imaging and single-cell transcriptional profiling reveal the tissue-specific regulation of bioactive ingredient biosynthesis in Taxus leaves. Plant communications, 100630. Advance online publication. https://doi.org/10.1016/j.xplc.2023.100630

Chen, X., Peng, C., Chen, Y., Ding, B., Liu, S., Song, Y., Li, Y., Sun, B., & Yang, R. (2023). A T-cell-related signature for prognostic stratification and immunotherapy response in hepatocellular carcinoma based on transcriptomics and single-cell sequencing. BMC bioinformatics, 24(1), 216. https://doi.org/10.1186/s12859-023-05344-7

Zhu, J., & Yang, Y. (2023). scMEB: a fast and clustering-independent method for detecting differentially expressed genes in single-cell RNA-seq data. BMC genomics, 24(1), 280. https://doi.org/10.1186/s12864-023-09374-6

Wang, P., Wang, Y., & Wang, Y. (2023). Ferroptosis patterns modulate immunocyte communication in tumor microenvironments: clinical value and therapeutic guidance of lung adenocarcinoma. Functional & integrative genomics, 23(2), 181. https://doi.org/10.1007/s10142-023-01100-5

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