Organizer

SCOG Management Team
Email
contact.scog@gmail.com
Website
https://www.singlecell.de/

Other Organizers

Jörn Walter (Saarland University)
Maria Colomé-Tatché (Helmholtz Munich)
Fabian Müller (Saarland University)
Application

Location

Überherrn/Saarlouis
DE

More Info

Application

Date

Nov 16 - 18 2022

Time

All Day

Labels

SCOG event

SCOG Workshop ‘Recent Advances in Single Cell Epigenomics 2022’

We are excited to announce this upcoming in-person workshop at Linslerhof, Überherrn/ Saarlouis.
The meeting will provide an overview of the latest findings and developments in the field of single cell epigenomics with cutting edge discussions. It will be followed by a hackathon on epiScanpy, a tool for the analysis of single cell epigenomics data.
  • Further Information:
    Date

    Meeting: November 16 (12 pm) – November 17 (4 pm) 2022
    Hackathon: November 17 (4:30 pm) – November 18 (4 pm) 2022


    Venue

    Linslerhof, Überherrn/Saarlouis


    Meeting

    Date 
    November 16 (12:00 am) – November 17 (4 pm) 2022

    Organizing Committee
    Maria Colomé-Tatché (HMGU Munich)
    Fabian Müller (USAAR Saarbrücken)
    Jörn Walter (USAAR Saarbrücken)

    Confirmed Speakers
    Maria Colomé-Tatché (Helmholtz Munich)
    Eileen Furlong (EMBL Heidelberg)
    Céline Vallot  (CNRS Paris)
    Amy Chen (Stanford University/Genentech)
    Ivan Costa (RWTH Aachen)
    Jop Kind (Hubrecht Institute Utrecht)
    Giovanni Tonon (IRCCS Milano)
    Wolf Reik (Altos Labs)
    Guido Sanguinetti (SISSA Trieste)

    Outline
    Invited and contributed talks
    Poster sessions
    General discussion


    Hackathon

    Date
    November 17 (4:30 pm) – November 18 (4 pm) 2022

    Organizer
    Maria Colomé-Tatché

    Outline
    First tutorials on scanpy and epiScanpy will be presented. EpiScanpy is a tool for the analysis of single cell epigenomics data (mainly scATAC-seq and single cell DNA methylation data). Participants will see how to build count matrices for different genomic features (peaks, promoters, enhancers, etc) from transcriptomic and epigenomic data; and it will be explained how downstream analysis such as clustering, low-dimensional data visualization, trajectory inference or differential calling are performed.
    Then, several data challenges will be presented that participants can work on in groups. If you have your own data, bring it!
    More details about the planned challenges and request of material will be send to participants later.

    Prerequisite
    The hackathon is open to wet-lab and dry-lab researchers at all levels of expertise regarding single cell analysis. However, epiScanpy is a python tool, so basic python knowledge will be required.


    Accommodation

    We have blocked a number of rooms at the conference venue (Linslerhof). Booking should be made individually by the participants after acceptance of the registration. The accommodation is sponsored by the BMBF (SCOG). Further information will be provided after registration.


    Registration

    The places for the meeting and the hackathon are limited (meeting: 50 places, hackathon: 25 places). Please complete the registration application, including information about your activities and interest in the field of single cell epigenomics. This information is important so that the organizing committee can review and accept applications, e.g. to consider the equal participation with respect to institutions, gender etc.

    Opening of applications: 08 August 2022
    Deadline for applications: 18 September 2022

    Notification of acceptance will be announced approximately 2 weeks after the application deadline and further information will be provided to complete and finalize the registration. If the application deadline is extended, the selection will be announced later.
    We encourage participants to apply for the meeting and hackathon and to submit an abstract for a poster or a short presentation.

Hourly Schedule

Day 1 - 16 November 2022

12:00 am - 2:45 pm
Session I
Invited & Contributed Talks / Lunch
2:45 pm - 4:15 pm
Session II
Invited & Contributed Talks
4:15 pm - 6:30 pm
Session III
Invited & Contributed Talks / Postersession
Dinner

Day 2 - 17 November

9 am - 11 am
Session IV
Invited & Contributed Talks
11 am - 2 pm
Session V
Invited & Contributed Talks / Lunch
2 pm - 4 pm
Session VI
Postersession / Discussion
4:30 pm - 7 pm
Hackathon (I)
Dinner

Day 3 - 18 November

9 am - 4 pm
Hackathon (II) / Lunch