SCOG Workshop ‘Recent Advances in Single Cell Epigenomics 2022’
We are excited to announce this upcoming in-person workshop at Linslerhof, Überherrn/ Saarlouis.
The meeting will provide an overview of the latest findings and developments in the field of single cell epigenomics with cutting edge discussions. It will be followed by a hackathon on epiScanpy, a tool for the analysis of single cell epigenomics data.
Application closed!
Program with abstracts for invited talks, short talks and posters HERE.
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Further Information:
PROGRAM
Program with abstracts for invited talks, short talks and posters HERE.
Wednesday, 16 November 2022
11:30 – 12:00 Registration and coffee
12:00 - 12:10 Introduction into SCOG and the scope of the workshop, Jörn Walter (UdS, Saarbrücken)
12:10 - 13:30 Session 1
NEAT-seq: Simultaneous profiling of intra-nuclear proteins, chromatin accessibility, and gene expression in single cells
Amy Chen (Genentech, San Francisco)
Mechanisms of cell plasticity in triple negative breast cancers
Céline Vallot (CNRS/Institut Curie, Paris)13:30 - 14:45 Lunch
14:45 - 16:00 Session 2 – Short talks
Principles of regulatory evolution inferred from early differentiation in primates
Ines Hellmann (LMU, Munich)
Dissecting Ewing sarcoma heterogeneity at a single-cell resolution
Daria Romanovskaia (CeMM, Vienna)
Cell printer assisted single cell ATAC-seq for in-depth epigenetic profiling of rare celltypes
Kathrin Kattler (USAAR, Saarbrücken)
Uncovering dynamic relationships between histone modifications in single cells
Jake Yeung (ISTA, Klosterneuburg)
Annotating scATAC-seq pseudobulk clusters
Aybuge Altay (MPI-MG, Berlin)16:00 - 16:45 Coffee and Poster session
16:45 - 18:45 Session 3
Single cell and single molecule computational epigenomics
Maria Colomé-Tatché (Helmholtz Munich)
Computational epigenomics: from single cells to gene regulatory networks
Ivan Costa (RWTH, Aachen)
Bayesian modelling of single-cell multi-omics data
Guido Sanguinetti (SISSA, Trieste)19:30 Dinner
Thursday, 17 November 2022
09:00 - 10:20 Session 4
Dissecting function in the regulation of developmental trajectories
Eileen Furlong (EMBL, Heidelberg)
Sketching Open and Closed Chromatin, One Cell at a Time
Giovanni Tonon (IRCCS, Milano)10:20 - 10:40 Coffee
10:40 - 12:00 Session 5
The chromatin landscape during early embryo development at single-cell resolution
Jop Kind (Hubrecht Institute, Utrecht)
Single cell multi-omics landscape of development and ageing
Wolf Reik (Altos Labs, Cambridge)12:00 - 13:15 Lunch
13:15 - 14:00 Poster session
14:00 - 15:45 Discussion
15:45 - 16:00 Closing remarks
16:00 End of Meeting (departure)
16:00 - 16:30 Coffee
16:30 - 19:00 Episcanpy Tutorial
19:30 Dinner
Friday, 18 November 2022
09:00 - 16:00 Episcanpy Hackathon
16:00 End of Hackathon(departure)
Date
Meeting: November 16 (12 pm) – November 17 (4 pm) 2022
Hackathon: November 17 (4:30 pm) – November 18 (4 pm) 2022
Venue
Linslerhof, Überherrn/Saarlouis
Meeting
Date
November 16 (12:00 am) – November 17 (4 pm) 2022Organizing Committee
Maria Colomé-Tatché (HMGU Munich)
Fabian Müller (USAAR Saarbrücken)
Jörn Walter (USAAR Saarbrücken)Confirmed Speakers
Maria Colomé-Tatché (Helmholtz Munich)
Eileen Furlong (EMBL Heidelberg)
Céline Vallot (CNRS Paris)
Amy Chen (Stanford University/Genentech)
Ivan Costa (RWTH Aachen)
Jop Kind (Hubrecht Institute Utrecht)
Giovanni Tonon (IRCCS Milano)
Wolf Reik (Altos Labs)
Guido Sanguinetti (SISSA Trieste)
Hackathon
Date
November 17 (4:30 pm) – November 18 (4 pm) 2022Organizer
Maria Colomé-TatchéOutline
The hackathon will be structured into two parts. At the beginning, we will present a tutorial about scanpy and episcanpy for you to get familiar with it. The second part of the hackathon will be hands-on programming: you will get access to some single-cell data and we will propose several open problems that we want to solve. You will have several hours to work in groups, and program solutions to the open problems, and finally apply your solution to the available data.
Accommodation
We have blocked a number of rooms at the conference venue (Linslerhof). Booking should be made individually by the participants after acceptance of the registration. The accommodation is sponsored by the BMBF (SCOG). Further information will be provided after registration.
Registration
The places for the meeting and the hackathon are limited (meeting: 50 places, hackathon: 25 places). Please complete the registration application, including information about your activities and interest in the field of single cell epigenomics. This information is important so that the organizing committee can review and accept applications, e.g. to consider the equal participation with respect to institutions, gender etc.
Opening of applications: 08 August 2022
Application closed on 22 September! You can sign up on the waiting list.Notification of acceptance will be announced approximately 2 weeks after the application deadline and further information will be provided to complete and finalize the registration. If the application deadline is extended, the selection will be announced later.
We encourage participants to apply for the meeting and hackathon and to submit an abstract for a poster or a short presentation.